Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs12418192 | chr11:11852892 | T/C | 0.000112 | 118 | 41.77 | 42.73 | 13.35 | KM Plot |
THYM | rs12418497 | chr11:11853163 | T/G | 0.000112 | 118 | 41.77 | 42.73 | 13.35 | KM Plot |
THYM | rs12418865 | chr11:125573569 | C/T | 0.000188 | 119 | 44.38 | 35.67 | 23.42 | KM Plot |
THYM | rs12419665 | chr11:67468722 | G/A | 6.26E-7 | 116 | 44.58 | 41.77 | 34.87 | KM Plot |
THYM | rs12420340 | chr11:11848007 | C/G | 0.000112 | 118 | 41.77 | 42.73 | 13.35 | KM Plot |
THYM | rs12422131 | chr11:11848425 | T/G | 0.000112 | 118 | 41.77 | 42.73 | 13.35 | KM Plot |
THYM | rs12439652 | chr15:94812137 | A/G | 6.62E-6 | 115 | 25.83 | 27.3 | 45.87 | KM Plot |
THYM | rs12444714 | chr16:71452606 | C/T | 0.000136 | 119 | 38.33 | 57.77 | 16.82 | KM Plot |
THYM | rs12463548 | chr2:30704981 | C/A | 1.29E-8 | 119 | 37.37 | 50.07 | 33.13 | KM Plot |
THYM | rs12465894 | chr2:30782953 | A/G | 1.29E-8 | 119 | 38.13 | 50.1 | 33.13 | KM Plot |
THYM | rs12466071 | chr2:30731996 | C/G | 1.4E-8 | 118 | 37.37 | 50.1 | 33.13 | KM Plot |
THYM | rs12466818 | chr2:30862980 | C/T | 1.38E-8 | 119 | 36.03 | 50.13 | 33.13 | KM Plot |
THYM | rs12467017 | chr2:30804252 | A/T | 1.33E-8 | 119 | 36.4 | 50.1 | 33.13 | KM Plot |
THYM | rs12467646 | chr2:30863092 | C/T | 1.38E-8 | 119 | 36.03 | 50.13 | 33.13 | KM Plot |
THYM | rs12467830 | chr2:30804151 | T/C | 1.33E-8 | 119 | 36.4 | 50.1 | 33.13 | KM Plot |